IL_8INF_131

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_131 not in the Motif Atlas

Geometric match to IL_4QIK_001

Geometric discrepancy: 0.3913

The information below is about IL_4QIK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8INF|1|2|A|3945
8INF|1|2|G|3946
8INF|1|2|A|3947
8INF|1|2|C|3948
*
8INF|1|2|G|4065
8INF|1|2|U|4066
8INF|1|2|U|4067
8INF|1|2|U|4068

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain f

Protein SDA1 homolog

Chain w

Ribosome biogenesis protein NOP53