IL_8INF_139

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_139 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.5043

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8INF|1|2|C|4412
8INF|1|2|C|4413
8INF|1|2|A|4414
8INF|1|2|A|4415
8INF|1|2|G|4416
*
8INF|1|2|C|4426
8INF|1|2|G|4427
8INF|1|2|A|4428
8INF|1|2|C|4429
8INF|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain T

Leydig cell tumor 10 kDa protein homolog