3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUC*GUG(A2M)G
Length
8 nucleotides
Bulged bases
8INF|1|2|G|4522
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8INF_140 not in the Motif Atlas
Geometric match to IL_5TBW_108
Geometric discrepancy: 0.1429
The information below is about IL_5TBW_108
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_54650.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8INF|1|2|C|4456
8INF|1|2|U|4457
8INF|1|2|C|4458
*
8INF|1|2|G|4520
8INF|1|2|U|4521
8INF|1|2|G|4522
8INF|1|2|A2M|4523
8INF|1|2|G|4524

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain B
60S ribosomal protein L3
Chain e
60S ribosomal protein L23

Coloring options:


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