IL_8INF_175
3D structure
- PDB id
- 8INF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8INF_175 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2918
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8INF|1|5|G|71
8INF|1|5|U|72
8INF|1|5|U|73
8INF|1|5|A|74
8INF|1|5|G|75
8INF|1|5|U|76
8INF|1|5|A|77
8INF|1|5|C|78
*
8INF|1|5|G|98
8INF|1|5|G|99
8INF|1|5|A|100
8INF|1|5|A|101
8INF|1|5|U|102
8INF|1|5|A|103
8INF|1|5|C|104
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- Translation machinery-associated protein 16
- Chain b
- 60S ribosomal protein L18a
- Chain p
- 60S ribosomal protein L7
- Chain r
- 60S ribosomal protein L5
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