IL_8INF_186

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AC(B8H)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INF_186 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.2298

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8INF|1|2|A|1858
8INF|1|2|C|1859
8INF|1|2|B8H|1860
*
8INF|1|2|A|1874
8INF|1|2|C|1875
8INF|1|2|U|1876

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain R

Translation machinery-associated protein 16

Chain p

60S ribosomal protein L7