IL_8INK_023

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8INK|1|2|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_023 not in the Motif Atlas

Geometric match to IL_8C3A_145

Geometric discrepancy: 0.3589

The information below is about IL_8C3A_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

8INK|1|2|G|487
8INK|1|2|G|488
*
8INK|1|2|C|665
8INK|1|2|G|666
8INK|1|2|A|667
8INK|1|2|C|668
8INK|1|2|C|669

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain l

60S ribosomal protein L28