IL_8INK_039

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAC*GGAG

Length

7 nucleotides

Bulged bases

8INK|1|2|A|1222

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_039 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3996

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8INK|1|2|C|1077
8INK|1|2|A|1078
8INK|1|2|C|1079
*
8INK|1|2|G|1220
8INK|1|2|G|1221
8INK|1|2|A|1222
8INK|1|2|G|1234

Current chains

Chain 2

28S rRNA

Nearby chains