IL_8INK_106

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8INK|1|2|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_106 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0899

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8INK|1|2|C|2867
8INK|1|2|G|2868
8INK|1|2|U|2869
8INK|1|2|A|2870
8INK|1|2|A|2871
8INK|1|2|C|2872
*
8INK|1|2|G|2877
8INK|1|2|G|2878
8INK|1|2|A|2879
8INK|1|2|U|2880
8INK|1|2|A|2881
8INK|1|2|A|2882
8INK|1|2|G|2883

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 9

Zinc finger protein 593

Chain X

60S ribosomal protein L37a

Chain w

G Protein Nucleolar 2