IL_8INK_146

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8INK_146 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1319

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8INK|1|2|U|4638
8INK|1|2|G|4639
8INK|1|2|C|4640
*
8INK|1|2|G|4659
8INK|1|2|G|4660
8INK|1|2|G|4661

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 7

Probable ribosome biogenesis protein RLP24

Chain 9

Zinc finger protein 593

Chain j

60S ribosomal protein L31