IL_8IP8_003

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGU*GC

Length

5 nucleotides

Bulged bases

8IP8|1|RB|G|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_003 not in the Motif Atlas

Geometric match to IL_4WF9_023

Geometric discrepancy: 0.3205

The information below is about IL_4WF9_023

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8IP8|1|RB|G|12
8IP8|1|RB|G|13
8IP8|1|RB|U|14
*
8IP8|1|SB|G|146
8IP8|1|SB|C|147

Current chains

Chain RB

60S ribosomal RNA

Chain SB

5.8S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein eL8

Chain HA

60S ribosomal protein eL15

Chain NA

60S ribosomal protein uL23