IL_8IP8_023

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_023 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.1075

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8IP8|1|RB|G|512
8IP8|1|RB|C|513
8IP8|1|RB|G|514
*
8IP8|1|RB|C|563
8IP8|1|RB|A|564
8IP8|1|RB|C|565

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein uL30

Chain EB

60S ribosomal protein uL4

Chain LB

60S ribosomal protein eL6

Chain MB

60S ribosomal protein eL33