IL_8IP8_032
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8IP8|1|RB|A|936, 8IP8|1|RB|G|940
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_032 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0631
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|G|808
8IP8|1|RB|A|809
8IP8|1|RB|A|810
8IP8|1|RB|A|811
8IP8|1|RB|G|812
*
8IP8|1|RB|C|934
8IP8|1|RB|U|935
8IP8|1|RB|A|936
8IP8|1|RB|G|937
8IP8|1|RB|U|938
8IP8|1|RB|A|939
8IP8|1|RB|G|940
8IP8|1|RB|C|941
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain HA
- 60S ribosomal protein eL15
- Chain IA
- 60S ribosomal protein uL15
- Chain KB
- 60S ribosomal protein eL13
- Chain UA
- 60S ribosomal protein eL37
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