IL_8IP8_035

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUA*UUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_035 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0976

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8IP8|1|RB|G|872
8IP8|1|RB|A|873
8IP8|1|RB|U|874
8IP8|1|RB|A|875
*
8IP8|1|RB|U|891
8IP8|1|RB|U|892
8IP8|1|RB|C|893

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain UA

60S ribosomal protein eL37