IL_8IP8_043
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGGUAA*UAAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_043 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0963
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|RB|C|995
8IP8|1|RB|A|996
8IP8|1|RB|G|997
8IP8|1|RB|G|998
8IP8|1|RB|U|999
8IP8|1|RB|A|1000
8IP8|1|RB|A|1001
*
8IP8|1|RB|U|1056
8IP8|1|RB|A|1057
8IP8|1|RB|A|1058
8IP8|1|RB|A|1059
8IP8|1|RB|U|1060
8IP8|1|RB|A|1061
8IP8|1|RB|G|1062
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain CB
- 60S ribosomal protein uL30
- Chain HB
- 60S ribosomal protein uL16
- Chain TB
- 5S ribosomal RNA; 5S rRNA
- Chain YA
- 60S ribosomal protein eL20
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