IL_8IP8_047

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_047 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.0865

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8IP8|1|RB|A|1013
8IP8|1|RB|G|1014
8IP8|1|RB|A|1015
*
8IP8|1|RB|U|1043
8IP8|1|RB|A|1044
8IP8|1|RB|U|1045

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain HB

60S ribosomal protein uL16

Chain KA

60S ribosomal protein uL18

Chain TB

5S ribosomal RNA; 5S rRNA