IL_8IP8_051

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_051 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.1004

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8IP8|1|RB|A|1123
8IP8|1|RB|U|1124
8IP8|1|RB|U|1125
*
8IP8|1|RB|A|1139
8IP8|1|RB|C|1140
8IP8|1|RB|U|1141

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein uL30

Chain OB

60S ribosomal protein eL29

Chain TB

5S ribosomal RNA; 5S rRNA