IL_8IP8_055

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8IP8|1|RB|U|1184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_055 not in the Motif Atlas

Homologous match to IL_8C3A_053

Geometric discrepancy: 0.1287

The information below is about IL_8C3A_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8IP8|1|RB|C|1183
8IP8|1|RB|U|1184
8IP8|1|RB|G|1185
*
8IP8|1|RB|C|1328
8IP8|1|RB|G|1329

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein uL30

Chain FB

60S ribosomal protein uL13

Chain MB

60S ribosomal protein eL33

Chain XA

60S ribosomal protein eL14

Chain YA

60S ribosomal protein eL20