IL_8IP8_066

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

8IP8|1|RB|G|1402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_066 not in the Motif Atlas

Homologous match to IL_8P9A_288

Geometric discrepancy: 0.5491

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8IP8|1|RB|C|1401
8IP8|1|RB|G|1402
8IP8|1|RB|G|1403
*
8IP8|1|RB|C|1414
8IP8|1|RB|G|1415

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain QA

60S ribosomal protein eL28

Chain SB

5.8S ribosomal RNA; 5.8S rRNA

Chain TA

60S ribosomal protein eL32