IL_8IP8_074

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGU*AGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_074 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.214

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8IP8|1|RB|G|1642
8IP8|1|RB|A|1643
8IP8|1|RB|A|1644
8IP8|1|RB|G|1645
8IP8|1|RB|U|1646
*
8IP8|1|RB|A|1802
8IP8|1|RB|G|1803
8IP8|1|RB|G|1804
8IP8|1|RB|A|1805
8IP8|1|RB|C|1806

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein eL27

Chain DA

60S ribosomal protein uL2

Chain PB

60S ribosomal protein eL34