IL_8IP8_080

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU*GUG

Length

5 nucleotides

Bulged bases

8IP8|1|RB|U|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_080 not in the Motif Atlas

Geometric match to IL_4V88_414

Geometric discrepancy: 0.3447

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8IP8|1|RB|C|1699
8IP8|1|RB|U|1700
*
8IP8|1|RB|G|1739
8IP8|1|RB|U|1740
8IP8|1|RB|G|1741

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain PB

60S ribosomal protein eL34