IL_8IP8_082
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAAAC*GGAGGUA
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1714, 8IP8|1|RB|A|1727
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_082 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.11
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|RB|U|1709
8IP8|1|RB|G|1710
8IP8|1|RB|G|1711
8IP8|1|RB|A|1712
8IP8|1|RB|A|1713
8IP8|1|RB|A|1714
8IP8|1|RB|C|1715
*
8IP8|1|RB|G|1725
8IP8|1|RB|G|1726
8IP8|1|RB|A|1727
8IP8|1|RB|G|1728
8IP8|1|RB|G|1729
8IP8|1|RB|U|1730
8IP8|1|RB|A|1731
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein eL27
- Chain GB
- 60S ribosomal protein eL43
- Chain LA
- 60S ribosomal protein eL19
- Chain PB
- 60S ribosomal protein eL34
- Chain RA
- 60S ribosomal protein eL30
- Chain pa
- 40S ribosomal protein uS15
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