IL_8IP8_100

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8IP8|1|RB|A|2390, 8IP8|1|RB|C|2980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_100 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0856

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IP8|1|RB|G|2389
8IP8|1|RB|A|2390
8IP8|1|RB|A|2391
*
8IP8|1|RB|U|2978
8IP8|1|RB|A|2979
8IP8|1|RB|C|2980
8IP8|1|RB|C|2981

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain MA

60S ribosomal protein uL22