IL_8IP8_106

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAA,UUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_106 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1527

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8IP8|1|RB|A|2431
8IP8|1|RB|A|2432
8IP8|1|RB|A|2433
*
8IP8|1|RB|U|2504
8IP8|1|RB|U|2505
8IP8|1|RB|U|2506

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1