IL_8IP8_107
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGGGUC*GGGC
- Length
- 11 nucleotides
- Bulged bases
- 8IP8|1|RB|G|2519, 8IP8|1|RB|G|2582, 8IP8|1|RB|G|2583
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_107 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.3329
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|RB|G|2517
8IP8|1|RB|U|2518
8IP8|1|RB|G|2519
8IP8|1|RB|G|2520
8IP8|1|RB|G|2521
8IP8|1|RB|U|2522
8IP8|1|RB|C|2523
*
8IP8|1|RB|G|2581
8IP8|1|RB|G|2582
8IP8|1|RB|G|2583
8IP8|1|RB|C|2584
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein eL8
- Chain DA
- 60S ribosomal protein uL2
- Chain NA
- 60S ribosomal protein uL23
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
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