IL_8IP8_108

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_108 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1538

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8IP8|1|RB|G|2528
8IP8|1|RB|C|2529
8IP8|1|RB|G|2530
*
8IP8|1|RB|C|2541
8IP8|1|RB|U|2542
8IP8|1|RB|C|2543

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein eL8

Chain DA

60S ribosomal protein uL2

Chain PB

60S ribosomal protein eL34