IL_8IP8_110

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_110 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2002

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8IP8|1|RB|A|2625
8IP8|1|RB|U|2626
8IP8|1|RB|C|2627
*
8IP8|1|RB|G|2645
8IP8|1|RB|G|2646
8IP8|1|RB|U|2647

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein eL21

Chain HB

60S ribosomal protein uL16

Chain cl

Transfer RNA; tRNA