IL_8IP8_112

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

8IP8|1|RB|A|2712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_112 not in the Motif Atlas

Geometric match to IL_8C3A_014

Geometric discrepancy: 0.2236

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8IP8|1|RB|G|2711
8IP8|1|RB|A|2712
8IP8|1|RB|U|2713
*
8IP8|1|RB|A|2737
8IP8|1|RB|C|2738

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain OB

60S ribosomal protein eL29

Chain WA

60S ribosomal protein eL42