IL_8IP8_114

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUC*GC

Length

6 nucleotides

Bulged bases

8IP8|1|RB|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_114 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.1725

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8IP8|1|RB|G|2767
8IP8|1|RB|A|2768
8IP8|1|RB|U|2769
8IP8|1|RB|C|2770
*
8IP8|1|RB|G|2784
8IP8|1|RB|C|2785

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain IA

60S ribosomal protein uL15

Chain JA

60S ribosomal protein eL18

Chain KB

60S ribosomal protein eL13

Chain WA

60S ribosomal protein eL42