IL_8IP8_115

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_115 not in the Motif Atlas

Geometric match to IL_5TBW_102

Geometric discrepancy: 0.0863

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8IP8|1|RB|G|2820
8IP8|1|RB|G|2821
*
8IP8|1|RB|U|2862
8IP8|1|RB|C|2863
8IP8|1|RB|C|2864

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain HB

60S ribosomal protein uL16

Chain OB

60S ribosomal protein eL29