IL_8IP8_119

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_119 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1127

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8IP8|1|RB|C|2832
8IP8|1|RB|C|2833
8IP8|1|RB|A|2834
8IP8|1|RB|A|2835
8IP8|1|RB|G|2836
*
8IP8|1|RB|C|2846
8IP8|1|RB|G|2847
8IP8|1|RB|A|2848
8IP8|1|RB|C|2849
8IP8|1|RB|G|2850

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain HB

60S ribosomal protein uL16

Chain JB

60S ribosomal protein eL40

Chain bl

eukaryotic release factor 1