IL_8IP8_132

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8IP8|1|RB|G|3074, 8IP8|1|RB|U|3075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_132 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.2894

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8IP8|1|RB|U|3059
8IP8|1|RB|U|3060
*
8IP8|1|RB|A|3073
8IP8|1|RB|G|3074
8IP8|1|RB|U|3075
8IP8|1|RB|G|3076

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain SA

60S ribosomal protein eL31