IL_8IP8_136

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_136 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3254

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8IP8|1|RB|C|3213
8IP8|1|RB|U|3214
8IP8|1|RB|A|3215
8IP8|1|RB|A|3216
8IP8|1|RB|G|3217
*
8IP8|1|RB|C|3245
8IP8|1|RB|C|3246
8IP8|1|RB|G|3247

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein eL6

Chain MB

60S ribosomal protein eL33

Chain XA

60S ribosomal protein eL14