IL_8IP8_149
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_149 not in the Motif Atlas
- Geometric match to IL_8CRE_402
- Geometric discrepancy: 0.2829
- The information below is about IL_8CRE_402
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8IP8|1|SB|C|119
8IP8|1|SB|G|120
8IP8|1|SB|A|121
8IP8|1|SB|G|122
*
8IP8|1|SB|C|133
8IP8|1|SB|G|134
8IP8|1|SB|A|135
8IP8|1|SB|G|136
Current chains
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain NA
- 60S ribosomal protein uL23
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
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