IL_8IP8_155
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_155 not in the Motif Atlas
- Geometric match to IL_7VFT_002
- Geometric discrepancy: 0.1907
- The information below is about IL_7VFT_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
8IP8|1|TB|C|78
8IP8|1|TB|A|79
8IP8|1|TB|A|80
*
8IP8|1|TB|U|96
8IP8|1|TB|G|97
8IP8|1|TB|G|98
Current chains
- Chain TB
- 5S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein uL30
- Chain HB
- 60S ribosomal protein uL16
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain YA
- 60S ribosomal protein eL20
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