IL_8IP8_156

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

8IP8|1|TB|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_156 not in the Motif Atlas

Homologous match to IL_4V9F_107

Geometric discrepancy: 0.3885

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8IP8|1|TB|A|83
8IP8|1|TB|U|84
8IP8|1|TB|G|85
*
8IP8|1|TB|C|92
8IP8|1|TB|U|93

Current chains

Chain TB

5S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein uL30

Chain HB

60S ribosomal protein uL16

Chain RB

Large subunit ribosomal RNA; LSU rRNA

Chain YA

60S ribosomal protein eL20