IL_8IP8_166
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGUUU*AUUCA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_166 not in the Motif Atlas
- Homologous match to IL_8P9A_382
- Geometric discrepancy: 0.1094
- The information below is about IL_8P9A_382
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.1
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|aa|U|118
8IP8|1|aa|U|119
8IP8|1|aa|G|120
8IP8|1|aa|U|121
8IP8|1|aa|U|122
8IP8|1|aa|U|123
*
8IP8|1|aa|A|299
8IP8|1|aa|U|300
8IP8|1|aa|U|301
8IP8|1|aa|C|302
8IP8|1|aa|A|303
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ca
- 40S ribosomal protein eS8
- Chain ja
- 40S ribosomal protein eS4
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