IL_8IP8_167

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_167 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1268

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8IP8|1|aa|A|125
8IP8|1|aa|U|126
8IP8|1|aa|G|127
*
8IP8|1|aa|C|295
8IP8|1|aa|A|296
8IP8|1|aa|U|297

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain gb

40S ribosomal protein eS6

Chain ja

40S ribosomal protein eS4