IL_8IP8_168

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8IP8|1|aa|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_168 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.1574

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

8IP8|1|aa|G|141
8IP8|1|aa|G|142
8IP8|1|aa|A|143
8IP8|1|aa|U|144
8IP8|1|aa|A|145
8IP8|1|aa|A|146
8IP8|1|aa|C|147
*
8IP8|1|aa|G|163
8IP8|1|aa|C|164
8IP8|1|aa|U|165
8IP8|1|aa|A|166
8IP8|1|aa|A|167
8IP8|1|aa|U|168
8IP8|1|aa|A|169
8IP8|1|aa|C|170

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain gb

40S ribosomal protein eS6