IL_8IP8_169

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_169 not in the Motif Atlas

Homologous match to IL_8C3A_403

Geometric discrepancy: 0.1727

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|C|147
8IP8|1|aa|C|148
8IP8|1|aa|G|149
8IP8|1|aa|U|150
*
8IP8|1|aa|A|160
8IP8|1|aa|G|161
8IP8|1|aa|A|162
8IP8|1|aa|G|163

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain gb

40S ribosomal protein eS6