IL_8IP8_174
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUAAAUCCG*CAU
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|aa|A|214, 8IP8|1|aa|A|215, 8IP8|1|aa|A|216, 8IP8|1|aa|U|243
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_174 not in the Motif Atlas
- Geometric match to IL_8VTW_081
- Geometric discrepancy: 0.214
- The information below is about IL_8VTW_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
8IP8|1|aa|A|210
8IP8|1|aa|G|211
8IP8|1|aa|A|212
8IP8|1|aa|U|213
8IP8|1|aa|A|214
8IP8|1|aa|A|215
8IP8|1|aa|A|216
8IP8|1|aa|U|243
8IP8|1|aa|C|244
8IP8|1|aa|C|245
8IP8|1|aa|G|246
*
8IP8|1|aa|C|253
8IP8|1|aa|A|254
8IP8|1|aa|U|255
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ib
- 40S ribosomal protein uS17
- Chain ja
- 40S ribosomal protein eS4
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