IL_8IP8_185

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

8IP8|1|aa|A|510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_185 not in the Motif Atlas

Geometric match to IL_3D0M_002

Geometric discrepancy: 0.2485

The information below is about IL_3D0M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8IP8|1|aa|A|484
8IP8|1|aa|A|485
8IP8|1|aa|U|486
*
8IP8|1|aa|A|509
8IP8|1|aa|A|510
8IP8|1|aa|U|511
8IP8|1|aa|U|512

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain ya

40S ribosomal protein eS30