IL_8IP8_211
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*CCUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_211 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.0927
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8IP8|1|aa|C|995
8IP8|1|aa|G|996
8IP8|1|aa|A|997
8IP8|1|aa|A|998
8IP8|1|aa|G|999
*
8IP8|1|aa|C|1015
8IP8|1|aa|C|1016
8IP8|1|aa|U|1017
8IP8|1|aa|A|1018
8IP8|1|aa|G|1019
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
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