IL_8IP8_242

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_242 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0973

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|G|1646
8IP8|1|aa|C|1647
8IP8|1|aa|C|1648
8IP8|1|aa|C|1649
*
8IP8|1|aa|G|1770
8IP8|1|aa|U|1771
8IP8|1|aa|A|1772
8IP8|1|aa|A|1773
8IP8|1|aa|C|1774

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain RB

Large subunit ribosomal RNA; LSU rRNA

Chain al

mRNA

Chain bl

eukaryotic release factor 1

Chain cl

Transfer RNA; tRNA