IL_8IP8_247

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_247 not in the Motif Atlas

Homologous match to IL_8P9A_457

Geometric discrepancy: 0.0645

The information below is about IL_8P9A_457

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8IP8|1|aa|C|1661
8IP8|1|aa|G|1662
8IP8|1|aa|A|1663
8IP8|1|aa|U|1664
*
8IP8|1|aa|A|1754
8IP8|1|aa|G|1755
8IP8|1|aa|A|1756
8IP8|1|aa|G|1757

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain RB

Large subunit ribosomal RNA; LSU rRNA