IL_8IP8_248

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8IP8|1|aa|U|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_248 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.1199

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8IP8|1|aa|U|1664
8IP8|1|aa|U|1665
8IP8|1|aa|G|1666
*
8IP8|1|aa|U|1753
8IP8|1|aa|A|1754

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain GA

60S ribosomal protein uL14

Chain IB

60S ribosomal protein eL41

Chain RB

Large subunit ribosomal RNA; LSU rRNA

Chain ga

40S ribosomal protein uS12