IL_8IP8_259
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_259 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0566
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8IP8|1|RB|G|1894
8IP8|1|RB|G|1895
8IP8|1|RB|A|1896
8IP8|1|RB|A|1897
8IP8|1|RB|G|1898
8IP8|1|RB|U|1899
8IP8|1|RB|C|1900
8IP8|1|RB|G|1901
8IP8|1|RB|G|1902
*
8IP8|1|RB|C|2326
8IP8|1|RB|U|2327
8IP8|1|RB|G|2328
8IP8|1|RB|U|2329
8IP8|1|RB|C|2330
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein uL3
- Chain GA
- 60S ribosomal protein uL14
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