IL_8IP9_004

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8IP9|1|aa|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_004 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.0776

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8IP9|1|aa|G|42
8IP9|1|aa|A|43
8IP9|1|aa|U|44
8IP9|1|aa|U|45
8IP9|1|aa|A|46
8IP9|1|aa|A|47
8IP9|1|aa|G|48
*
8IP9|1|aa|C|435
8IP9|1|aa|G|436
8IP9|1|aa|C|437

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ga

40S ribosomal protein S23