IL_8IP9_009

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGU*AA

Length

6 nucleotides

Bulged bases

8IP9|1|aa|A|115, 8IP9|1|aa|G|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_009 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.0818

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8IP9|1|aa|U|114
8IP9|1|aa|A|115
8IP9|1|aa|G|116
8IP9|1|aa|U|117
*
8IP9|1|aa|A|304
8IP9|1|aa|A|305

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ib

40S ribosomal protein uS17

Chain ja

40S ribosomal protein eS4