IL_8IP9_010

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1359

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8IP9|1|aa|U|118
8IP9|1|aa|U|119
8IP9|1|aa|G|120
8IP9|1|aa|U|121
8IP9|1|aa|U|122
8IP9|1|aa|U|123
*
8IP9|1|aa|A|299
8IP9|1|aa|U|300
8IP9|1|aa|U|301
8IP9|1|aa|C|302
8IP9|1|aa|A|303

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ja

40S ribosomal protein eS4