IL_8IP9_016

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8IP9|1|aa|C|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_016 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2852

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8IP9|1|aa|C|202
8IP9|1|aa|A|203
*
8IP9|1|aa|U|262
8IP9|1|aa|C|263
8IP9|1|aa|G|264

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ja

40S ribosomal protein eS4